Package: Canek
Type: Package
Title: Batch Correction of Single Cell Transcriptome Data
Version: 0.2.5
Authors@R: c(
    person("Martin", "Loza", email = "martin.loza.lopez@gmail.com", role = c("aut", "cre"), 
        comment = c(ORCID = "0000-0002-3342-2643")),
    person("Diego", "Diez", email = "diego10ruiz@gmail.com", role = c("aut"),
        comment = c(ORCID = "0000-0002-2325-4893"))
    )
Description: Non-linear/linear hybrid method for batch-effect
        correction that uses Mutual Nearest Neighbors (MNNs) to
        identify similar cells between datasets. Reference: Loza M. et
        al. (NAR Genomics and Bioinformatics, 2020)
        <doi:10.1093/nargab/lqac022>.
Depends: R (>= 3.5.0)
Imports: FNN, irlba, numbers, fpc, bluster, igraph, matrixStats, utils
Suggests: testthat (>= 2.1.0), Seurat, SingleCellExperiment,
        SummarizedExperiment, scater, batchelor, scran, knitr,
        rmarkdown, patchwork, ggplot2
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
VignetteBuilder: knitr
URL: https://martinloza.github.io/Canek/
BugReports: https://github.com/MartinLoza/Canek/issues
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://martinloza.r-universe.dev
Date/Publication: 2024-01-12 04:11:21 UTC
RemoteUrl: https://github.com/martinloza/canek
RemoteRef: HEAD
RemoteSha: 26075598fe03e5eb5e65381e77216999153478a9
NeedsCompilation: no
Packaged: 2026-07-03 05:23:25 UTC; root
Author: Martin Loza [aut, cre] (ORCID: <https://orcid.org/0000-0002-3342-2643>),
  Diego Diez [aut] (ORCID: <https://orcid.org/0000-0002-2325-4893>)
Maintainer: Martin Loza <martin.loza.lopez@gmail.com>