Package: Canek 0.2.5

Canek: Batch Correction of Single Cell Transcriptome Data

Non-linear/linear hybrid method for batch-effect correction that uses Mutual Nearest Neighbors (MNNs) to identify similar cells between datasets. Reference: Loza M. et al. (NAR Genomics and Bioinformatics, 2020) <doi:10.1093/nargab/lqac022>.

Authors:Martin Loza [aut, cre], Diego Diez [aut]

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Bug tracker:https://github.com/martinloza/canek/issues

On CRAN:

batch-effectsbioinformaticssingle-cell-rna-seqtranscriptomics

3 exports 5 stars 1.60 score 42 dependencies 23 scripts 322 downloads

Last updated 8 months agofrom:26075598fe. Checks:OK: 7. Indexed: yes.

Exports:CorrectBatchCorrectBatchesRunCanek

Dependencies:BHBiocGenericsBiocNeighborsBiocParallelblusterclasscliclustercodetoolscpp11DEoptimRdiptestflexmixFNNformatRfpcfutile.loggerfutile.optionsglueigraphirlbakernlablambda.rlatticelifecyclemagrittrMASSMatrixmatrixStatsmclustmodeltoolsnnetnumberspkgconfigprabclusRcppRcppHNSWrlangrobustbaseS4Vectorssnowvctrs